We are using long-read genome sequencing to understand the genetics of tristyly, a highly complex reproductive system found in the large South African plant genus Oxalis, which includes some of the world's worst weeds and some of South Africa's most endangered and beautiful species.
Without 1KSA, we would simply lack the funding to do so. Sequencing Oxalis genomes allows us to understand the evolutionary origins of this ancient breeding system and enable better management measures for weed and threatened species alike.
Dr. Kenneth Oberlander,
Senior Lecturer in the Department of Plant and Soil Sciences and Curator of the H.G.W.J.Schweickerdt Herbarium, University of Pretoria
Photo credit: © David Hoare
The Aquatics Genomics Platform, in conjunction with the SAIAB Biobank, has identified important marine and freshwater fish and invertebrates for sequencing under the 1KSA project. Whole genome sequences and assemblies will be vital tools in conservation and future Blue economy research.
Dr. Gwynneth Matcher, SAIAB Aquatic Genomics Research Platform and Ms Seshnee Reddy, SAIAB Biobank
1KSA Impacts
Why it matters
Sequenced genomes unveil biodiversity's wonders and economic catalysts, unlocking population genomics insights, conservation strategies, climate impact mitigation, and novel bioprospecting opportunities that spark bioeconomic growth through innovative compound discovery.
Through this genomic lens, IKSA empowers R&D into indigenous species, igniting a virtuous cycle of new knowledge, job creation, and economic prosperity fueled by nature's vast potential waiting to be explored and harnessed for a thriving future.
The support provided by the 1KSA initiative enabled CenGen, located in rural Worcester, to establish essential infrastructure, methods, and expertise for conducting in-house whole genome sequencing of significant indigenous plants.
Dr. Renée Prins, Director of CenGen
Photo credit: © JCorven (edited)
1KSA allowed for long read sequencing of the Bryde's whale genome, filling in a knowledge gap for the species. The genome will serve as a valuable tool for population level comparative work of Bryde's whales which aligns with my PhD research objectives.
Dominique Paynee (she/her) PhD candidate University of Pretoria, UP Mammal Research Institute Whale Unit
Photo credit: © riaanj