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Group:
Reptile
Estimated genome size:
10 - 20 cm (total body length)
Size:
10 - 20 cm (total body length)
Distribution:
Endemic to the Republic of South Africa, occurring in Little Namaqualand from Port Nolloth to Clanwilliam.
PromethION Sequencing Report:
Output:
48.66 Gigabases
Approximate N50:
5.93 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.56 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 96.9%, D: 2.0%]
Importance:
It serves as an important model species for studying specific stages of limb development within the genus Scelotes, representing an intermediate limb development stage (forelimb digits = 0; hindlimb digits = 2), and for investigating the genomic evolution of vertebrates. It has a restricted distribution and occurs in distinct habitats and regions, making it an excellent model species for biogeographic and molecular ecology studies.
Sample Contributor contact details:
Dr. Zhongning Zhao
University of Free State
Group:
Bony fish
Genome size:
137 Million DNA base pairs (1.37 Gigabases )
Size:
150 cm TL (male), 120 cm SL (female)
Distribution:
The African longfin eel is endemic to countries bordering the southwest Indian Ocean. Along the east coast of Africa, A. mossambica is found in rivers from Kenya south to Table Bay (South Africa), also found on Madagascar and other western Indian Ocean islands (Mascarene: Réunion and Mauritius Islands, Comoros: Mayotte Island and the Seychelles: Mahé and Praslin Islands).
PromethION Sequencing Report:
Output:
128 Gigabases
Approximate N50:
4.71 kilobases
Assembly N50:
TBA
Contig number:
TBA
Draft Genome Assembly Statistics:
Assembler used:
TBA
Genome Length:
0,8 Gigabases
BUSCO completeness score (single and duplicated genes):
71.4%
BUSCO database:
TBA
Anguilla mossambica
African Longfin eel
Importance:
Harvested and traded on a global scale for farming and human consumption, is also used as gamefish. This species is considered Near Threatened on IUCN Redlist.
Sample Contributor contact details:
Dr Gwynneth Matcher
South African Institute for Aquatic Biodiversity
Date Published:
2023-03-01
Photo credit:
© C. Minkley
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