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Group:
Reptile
Estimated genome size:
17 cm maximum (total body length).
Size:
17 cm maximum (total body length).
Distribution:
It is found in the Eastern Cape, Free State, Western Cape and Northern Cape
provinces of South Africa.
PromethION Sequencing Report:
Output:
89.36 Gigabases
Approximate N50:
6.51 kilobases
Draft Genome Assembly Statistics:
Genome Length:
4.53 Gigabases
BUSCO completeness score (single and duplicated genes):
99.6% [Single: 50.6%, Duplicated: 49%]
Importance:
The greater padloper tortoise is endemic to South Africa and contributes to ecosystem stability in the Karoo. As the largest species in the genus Homopus, it is of scientific interest for studies of limb development, as it is one of only two Homopus species with four digits on each foot.
Sample Contributor contact details:
Zhongning Zhao
University of the Free State
Group:
Bony fish
Genome size:
700 - 800 million DNA base pairs (0.7 - 0.8 Gigabases)
Size:
145 cm
Distribution:
Namibia to South Africa, with a genetic break between countries.
PromethION Sequencing Report:
Output:
64.68 Gigabases
Approximate N50:
3.38 kilobases
Assembly N50:
2 329.84 kilobases
Contig number:
2 996
Draft Genome Assembly Statistics:
Assembler used:
Flye
Genome Length:
0.67 Gigabases
BUSCO completeness score (single and duplicated genes):
99.3% [S: 97.3%, D: 2.0%]
BUSCO database:
eukaryota
Argyrosomus inodorus
Silver kob
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Importance:
The silver kob is a marine fish endemic to Southern Africa and is heavily exploited in South African waters. However, little is known about its genomic diversity, population sub structuring, or potential hybridization with other Argyrosomus species in the region.
Sample Contributor contact details:
Dr Romina Henriques
University of Pretoria
Date Published:
2025-02-17
Photo credit:
© G.H. Engelhard
Fauna
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