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Group:
Reptile
Estimated genome size:
10 - 20 cm (total body length)
Size:
10 - 20 cm (total body length)
Distribution:
Endemic to the Republic of South Africa, occurring in Little Namaqualand from Port Nolloth to Clanwilliam.
PromethION Sequencing Report:
Output:
48.66 Gigabases
Approximate N50:
5.93 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.56 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 96.9%, D: 2.0%]
Importance:
It serves as an important model species for studying specific stages of limb development within the genus Scelotes, representing an intermediate limb development stage (forelimb digits = 0; hindlimb digits = 2), and for investigating the genomic evolution of vertebrates. It has a restricted distribution and occurs in distinct habitats and regions, making it an excellent model species for biogeographic and molecular ecology studies.
Sample Contributor contact details:
Dr. Zhongning Zhao
University of Free State
Group:
Eudicot
Genome size:
700 million DNA base pairs (0.7 Gigabases)
Size:
4 meters (height)
Distribution:
It grows naturally in coastal bush, costal forest and on sand dunes from the Eastern Cape, northwards to Kwazulu Natal and Mozambique. Today it is commonly grown in many countries abroad.
PromethION Sequencing Report:
Output:
205.9 Gigabases
Approximate N50:
18.07 kilobases
Assembly N50:
TBA
Contig number:
TBA
Draft Genome Assembly Statistics:
Assembler used:
TBA
Genome Length:
0.47 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S:92.2%, D:6.6%]
BUSCO database:
TBA
Carissa macrocarpa
Grootnoemnoem
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Importance:
A fast-growing, wind resistant, impenetrable shrub that produces fruits which can be eaten raw or used to make jams and jellies.
Sample Contributor contact details:
Ernst Van Jaarsveld,
University of Western Cape | Babylonstoren
Date Published:
2024-06-12
Photo credit:
© D.B. Montesinos-Tubée
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