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Group:
Reptile
Estimated genome size:
17 cm maximum (total body length).
Size:
17 cm maximum (total body length).
Distribution:
It is found in the Eastern Cape, Free State, Western Cape and Northern Cape
provinces of South Africa.
PromethION Sequencing Report:
Output:
89.36 Gigabases
Approximate N50:
6.51 kilobases
Draft Genome Assembly Statistics:
Genome Length:
4.53 Gigabases
BUSCO completeness score (single and duplicated genes):
99.6% [Single: 50.6%, Duplicated: 49%]
Importance:
The greater padloper tortoise is endemic to South Africa and contributes to ecosystem stability in the Karoo. As the largest species in the genus Homopus, it is of scientific interest for studies of limb development, as it is one of only two Homopus species with four digits on each foot.
Sample Contributor contact details:
Zhongning Zhao
University of the Free State
Group:
Bony fish
Genome size:
1 560 million DNA base pairs (1.56 Gigabases)
Size:
Up to 50 centimeters in length
Distribution:
The Tugela labeo is Endemic to the Tugela River system in South Africa.
PromethION Sequencing Report:
Output:
34.69 Gigabases
Approximate N50:
6.08 kilobases
Assembly N50:
TBA
Contig number:
TBA
Draft Genome Assembly Statistics:
Assembler used:
TBA
Genome Length:
1.06 Gigabases
BUSCO completeness score (single and duplicated genes):
99.3% [S: 96.9%, D: 2.4%]
BUSCO database:
TBA
Labeo rubromaculatus
Tugela labeo
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Importance:
The Tugela labeo is a freshwater fish species endemic to South Africa. Currently listed as Vulnerable on the IUCN Red List, it is facing population decline due to a variety of recorded threats. It is primarily targeted in occasional recreational angling but also serves as an important species for subsistence fisheries in large dams and riverine habitats.
Sample Contributor contact details:
Dr Gwynneth Matcher
South African Institute for Aquatic Biodiversity
Date Published:
2025-03-12
Photo credit:
© R. Palmer
Fauna
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