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Group:
Reptile
Estimated genome size:
10 - 20 cm (total body length)
Size:
10 - 20 cm (total body length)
Distribution:
Endemic to the Republic of South Africa, occurring in Little Namaqualand from Port Nolloth to Clanwilliam.
PromethION Sequencing Report:
Output:
48.66 Gigabases
Approximate N50:
5.93 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.56 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 96.9%, D: 2.0%]
Importance:
It serves as an important model species for studying specific stages of limb development within the genus Scelotes, representing an intermediate limb development stage (forelimb digits = 0; hindlimb digits = 2), and for investigating the genomic evolution of vertebrates. It has a restricted distribution and occurs in distinct habitats and regions, making it an excellent model species for biogeographic and molecular ecology studies.
Sample Contributor contact details:
Dr. Zhongning Zhao
University of Free State
Group:
Bird
Estimated genome size:
Size:
70 cm (height) 125 cm (wingspan)
Distribution:
Prince Edward and Crozet Islands
PromethION Sequencing Report:
Output:
65.49 Gigabases
Approximate N50:
5.48 thousand bases (kilobases)
Assembly N50:
2 723.9 kilobases
Contig number:
3 739
Draft Genome Assembly Statistics:
Assembler used:
Flye
Genome Length:
1.22 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 98.0%, D: 0.8%]
BUSCO database:
eukaryota
Leucocarbo melanogenesis
Crozet shag
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Importance:
This species is critically endangered due to reduced breeding success and inhabits a relatively small geographic area. This genome will be used as a reference genome for future conservation genetics work.
Sample Contributor contact details:
Dr Monica Mwale
SANBI, Centre for Conservation Science
Date Published:
2025-10-14
Photo credit:
© A. Makhado
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