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Phylum:
Chordata
Estimated genome size:
Maximum length 50 cm
Organism size:
Maximum length 50 cm
Distribution:
Endemic to southern Africa, Labeo capensis is primarily found in the Orange-Vaal River system.
PromethION Sequencing Report:
Output:
13.8 Gigabases
Approximate N50:
5.49 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.1 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 94.9%, D: 3.9%]
Importance:
The Orange river mudfish is a freshwater species endemic to southern Africa. Human activities, such as inter-basin water transfers, have facilitated hybridisation with Moggel (Labeo umbratus). Genomic data are essential to clarify its phylogenetic placement and assess the extent of hybridisation. It is listed as Least Concern on the IUCN Red List. Labeo capensis is an occasional angling species, and it is also used in ecological and physiological research. Additionally, it holds potential as a commercial species in large impoundments.
Sample Contributor contact details:
Dr Gwynneth Matcher
South African Institute for Aquatic Biodiversity
Phylum:
Mollusca
Estimated genome size:
675 Million DNA base pairs (0,675 Gigabases)
Organism size:
9 – 10 cm
Distribution:
Native to the western Indian Ocean (from the Bay of Bengal and the Red Sea to the tip of South Africa), and to the west coast of Africa at least as far north as the Congo.
PromethION Sequencing Report:
Output:
~29 Gigabases
Approximate N50:
4,68 kilobases
Draft Genome Assembly Statistics:
Genome Length:
0,9 Gigabases
BUSCO completeness score (single and duplicated genes):
95,7%
Perna perna
Brown mussel
Importance:
The Brown mussel plays a major role as an ecosystem engineer; is an important human and wildlife food resource.
Sample Contributor contact details:
South African Institute for Aquatic Biodiversity
Date Published:
2023-03-01
Photo credit:
© F. Porri
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