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Phylum:
Chordata
Estimated genome size:
Maximum length 50 cm
Organism size:
Maximum length 50 cm
Distribution:
Endemic to southern Africa, Labeo capensis is primarily found in the Orange-Vaal River system.
PromethION Sequencing Report:
Output:
13.8 Gigabases
Approximate N50:
5.49 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.1 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 94.9%, D: 3.9%]
Importance:
The Orange river mudfish is a freshwater species endemic to southern Africa. Human activities, such as inter-basin water transfers, have facilitated hybridisation with Moggel (Labeo umbratus). Genomic data are essential to clarify its phylogenetic placement and assess the extent of hybridisation. It is listed as Least Concern on the IUCN Red List. Labeo capensis is an occasional angling species, and it is also used in ecological and physiological research. Additionally, it holds potential as a commercial species in large impoundments.
Sample Contributor contact details:
Dr Gwynneth Matcher
South African Institute for Aquatic Biodiversity
Phylum:
Magnoliophyta
Estimated genome size:
800 million DNA base pairs (0.8 Gigabases)
Organism size:
~ 0.5 - 2 meters (height)
Distribution:
Spekboom is found predominantly in the Eastern Cape of South Africa, particularly in the Karoo regions, where the semi-arid conditions are ideal for this resilient plant.
PromethION Sequencing Report:
Output:
75.56 Gigabases
Approximate N50:
22.81 kilobases
Draft Genome Assembly Statistics:
Genome Length:
0.45 Gigabases
BUSCO completeness score (single and duplicated genes):
99%
Portulacaria afra
Spekboom
Importance:
Spekboom is known for its carbon sequestration, adaptability to harsh environments and soil binding properties that can help prevent erosion. It has low water requirements and edible leaves that are high in Vitamin C, enjoyed by wild animals (especially elephants) and humans alike.
Sample Contributor contact details:
Ernst Van Jaarsveld,
University of Western Cape | Babylonstoren
Date Published:
2023-03-01
Awaiting DOI
Photo credit:
© D. Erasmus
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