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Phylum:
Chordata
Estimated genome size:
Maximum length 50 cm
Organism size:
Maximum length 50 cm
Distribution:
Endemic to southern Africa, Labeo capensis is primarily found in the Orange-Vaal River system.
PromethION Sequencing Report:
Output:
13.8 Gigabases
Approximate N50:
5.49 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.1 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 94.9%, D: 3.9%]
Importance:
The Orange river mudfish is a freshwater species endemic to southern Africa. Human activities, such as inter-basin water transfers, have facilitated hybridisation with Moggel (Labeo umbratus). Genomic data are essential to clarify its phylogenetic placement and assess the extent of hybridisation. It is listed as Least Concern on the IUCN Red List. Labeo capensis is an occasional angling species, and it is also used in ecological and physiological research. Additionally, it holds potential as a commercial species in large impoundments.
Sample Contributor contact details:
Dr Gwynneth Matcher
South African Institute for Aquatic Biodiversity
Phylum:
Chordata
Estimated genome size:
3.1 Billion DNA base pairs (3.1 Gigabases)
Organism size:
45 - 55 cm (height)
Distribution:
Western Cape and Eastern Cape provinces of South Africa.
PromethION Sequencing Report:
Output:
33.71 Gigabases
Approximate N50:
3.39 kilobases
Draft Genome Assembly Statistics:
Genome Length:
2612.14 Mb
BUSCO completeness score (single and duplicated genes):
96.5%
Raphicerus melanotis
Cape Grysbok
Importance:
The Cape Grysbok is endemic to South Africa and near-endemic to the Cape Floristic Region. Very limited genetic data is available for Cape Grysbok. Its genome will provide information to adequately conserve this species by understanding how this dwarf antelope is adapted to its globally unique environment, and why it thrived while other ungulates went (nearly) extinct.
Sample Contributor contact details:
Prof. Paulette Bloomer
University of Pretoria
Date Published:
2024-06-06
Awaiting DOI
Photo credit:
© B. Claassen
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