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Group:
Reptile
Estimated genome size:
10 - 20 cm (total body length)
Size:
10 - 20 cm (total body length)
Distribution:
Endemic to the Republic of South Africa, occurring in Little Namaqualand from Port Nolloth to Clanwilliam.
PromethION Sequencing Report:
Output:
48.66 Gigabases
Approximate N50:
5.93 kilobases
Draft Genome Assembly Statistics:
Genome Length:
1.56 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 96.9%, D: 2.0%]
Importance:
It serves as an important model species for studying specific stages of limb development within the genus Scelotes, representing an intermediate limb development stage (forelimb digits = 0; hindlimb digits = 2), and for investigating the genomic evolution of vertebrates. It has a restricted distribution and occurs in distinct habitats and regions, making it an excellent model species for biogeographic and molecular ecology studies.
Sample Contributor contact details:
Dr. Zhongning Zhao
University of Free State
Group:
Mammal
Genome size:
3.1 Billion DNA base pairs (3.1 Gigabases)
Size:
45 - 55 cm (height)
Distribution:
Western Cape and Eastern Cape provinces of South Africa.
PromethION Sequencing Report:
Output:
33.71 Gigabases
Approximate N50:
3.39 kilobases
Assembly N50:
TBA
Contig number:
TBA
Draft Genome Assembly Statistics:
Assembler used:
TBA
Genome Length:
2612.14 Mb
BUSCO completeness score (single and duplicated genes):
96.5%
BUSCO database:
TBA
Raphicerus melanotis
Cape Grysbok
Importance:
The Cape Grysbok is endemic to South Africa and near-endemic to the Cape Floristic Region. Very limited genetic data is available for Cape Grysbok. Its genome will provide information to adequately conserve this species by understanding how this dwarf antelope is adapted to its globally unique environment, and why it thrived while other ungulates went (nearly) extinct.
Sample Contributor contact details:
Prof. Paulette Bloomer
University of Pretoria
Date Published:
2024-06-06
Photo credit:
© B. Claassen
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