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Phylum:
Chordata
Estimated genome size:
3 – 4 meters
Organism size:
3 – 4 meters
Distribution:
Angola, Botswana, Cameroon, Central African Republic, Chad, The Democratic Republic of the Congo, Eritrea, Ethiopia, Kenya, Malawi, Mali, Mozambique, Namibia, Nigeria, Rwanda, Somalia, South Africa, South Sudan, United Republic of Tanzania, Uganda, Zambia, Zimbabwe.
PromethION Sequencing Report:
Output:
110.47 Gigabases
Approximate N50:
8.38 kilobases
Draft Genome Assembly Statistics:
Genome Length:
3.16 Gigabases
BUSCO completeness score (single and duplicated genes):
98.8% [S: 82.7%, D: 15.3%]
Importance:
African savanna elephants are the largest land animals and crucial ecosystem engineers. Listed as endangered by the IUCN Red list, they are vital for South African tourism. This project aims to sequence the genome of a wild bull elephant from a native KZN population, providing valuable genetic data beyond existing zoo based or outdated sequences.
Sample Contributor contact details
Dr Carel J. Oosthuizen
University of Pretoria
Phylum:
Chordata
Estimated genome size:
749 Million DNA base pairs (0,749 Gigabases)
Organism size:
6 - 7 cm
Distribution:
The Rocky kurper is a South African endemic, occurring in the Kowie, Great Fish, Buffalo, Keiskamma and Nahoon River systems.
PromethION Sequencing Report:
Output:
~72 Gigabases
Approximate N50:
4,68 kilobases
Draft Genome Assembly Statistics:
Genome Length:
0,64 Giga bases
BUSCO completeness score (single and duplicated genes):
99,6%
Sandelia bainsii
Rocky kurper
Importance:
Used commercially as aquarium fish. Due to human impacts on riverine systems and the fact that it is preyed upon by introduced predators such as bass and sharptooth catfish, the Rocky kurper is listed as Endangered on IUCN Redlist. This is the first species in this genus to have its genome sequenced.
Date Published
2023-3-1
Photo credit:
© P. Skelton
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